Gene Details:

Functional Descriptions:

  • More recently, breeders have selected yellow endosperm variants of maize over ancestral white phenotypes for their increased nutritional value resulting from the up-regulation of the Y1 phytoene synthase gene product in endosperm tissue.
  • Y1 a key gene controlling carotenoid pigment in endosperm which was proved under breeding selection.
  • The maize Y1 gene on chromosome 6 has undergone recent selection for endosperm color phenotype.
  • Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >Zm00001eb271860_T002 GAGGTGCGCGTGCTCCTTGCTGTTCTGCTGACTGGTCTCACCATCTCATCCCACCACCACCACCACCACCACCATCTTTAGGATAAGATAGCAAATATATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAAGTAACATATATATTCTTCCTGCGACAGGCACGAACATGCATGTGTTCAATAGCACAGATGTGATGATATGACTGTCACCATGTCTTTTAGTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGAAACTTCATGAAGAGGCAGATCAAGAGGGCCAGGATGTTTTTTGAGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCAACGACTACAACAACTTCACGAAGAGGGCGTATGTTGGTAAAGGGAAGAAGTTGCTAGCACTTCCTGTGGCATATGGAAAATCGCTACTGCTCCCATGTTCATTGAGAAATGGCCAGACCTAGCCACCAGAGAAGCTGCAATGCAAGGTTCAGGTTAGGCTAGATAGAAAGTTAAATGGGGCAACATCAGGAGGCCTTGATGAAAAACAGACAACCTGGTGAATTGTTGTTGGGATCAGGCACAGAACAGATAAGAGCCGCGCAGCCAACCTAGGGCATGTTTGGTTTCAATTAGTTCTAGGACTAAACTTTAGTCCTAGGACTAAACTTTAGTCCCTATATGTTTGGTTCTAGGGACTAAATAGATTCTAAAGTCATTAAATACATTGTCCAAAGACTCAAATACCCTTAGAATATACTCATGATATTAGTTATCTATAAAAAGGTAAGGGCAACATGATAATTATGAGCTTTTAGTCTCTTTTAGCACCTATGTGAAGGACTAAAGACTAAATCATTTTAGTCCATATTTTAGTCCTAGTGTTTGGCAAAAAAGGGACTAAAAGGGACTAAAAACTAGAGACTAATCTTTAGTCCCTCTAACCAAACACCCCCCTAGATGGATACGGAACATTCGCCTCTTATTCGGAGCAATATATGTCTCTCAAGGAAAGAGCCCAACATGTATACTGCCTTCTTTTTC
  • >Zm00001eb271860_T001 GAGGTGCGCGTGCTCCTTGCTGTTCTGCTGACTGGTCTCACCATCTCATCCCACCACCACCACCACCACCACCATCTTTAGGATAAGATAGCAAATATATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAAGTAACATATATATTCTTCCTGCGACAGGCACGAACATGCATGTGTTCAATAGCACAGATGTGATGATATGACTGTCACCATGTCTTTTAGTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGAAACTTCATGAAGAGGCAGATCAAGAGGGCCAGGATGTTTTTTGAGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCAACGACTACAACAACTTCACGAAGAGGGCGTATGTTGGTAAAGGGAAGAAGTTGCTAGCACTTCCTGTGGCATATGGAAAATCGCTACTGCTCCCATGTTCATTGAGAAATGGCCAGACCTAGCCACCAGAGAAGCTGCAATGCAAGGTTCAGGTTAGGCTAGATAGAAAGTTAAATGGGGCAACATCAGGAGGCCTTGATGAAAAACAGACAACCTGGTGAATTGTTGTTGGGATCAGGCACAGAACAGATAAGAGCCGCGCAGCCAACCTAGGGCATGTTTGGTTTCAATTAGTTCTAGGACTAAACTTTAGTCCTAGGACTAAACTTTAGTCCCTATATGTTTGGTTCTAGGGACTAAATAGATTCTAAAGTCATTAAATACATTGTCCAAAGACTCAAATACCCTTAGAATATACTCATGATATTAGTTATCTATAAAAAGGTAAGGGCAACATGATAATTATGAGCTTTTAGTCTCTTTTAGCACCTATGTGAAGGACTAAAGACTAAATCATTTTAGTCCATATTTTAGTCCTAGTGTTTGGCAAAAAAGGGACTAAAAGGGACTAAAAACTAGAGACTAATCTTTAGTCCCTCTAACCAAACACCCCCCTAGATGGATACGGAACATTCGCCTCTTATTCGGAGCAATATATGTCTCTCAAGGAAAGAGCCCAACATGTATACTGCCTTCTTTTTC
CDS Sequence
  • >Zm00001eb271860_T002 ATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAA
  • >Zm00001eb271860_T001 ATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAA
Protein Sequence
  • >Zm00001eb271860_P002 MAIILVRAASPGLSAADSISHQGTLQCSTLLKTKRPAARRWMPCSLLGLHPWEAGRPSPAVYSSLAVNPAGEAVVSSEQKVYDVVLKQAALLKRQLRTPVLDARPQDMDMPRNGLKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPTALDRWEKRLEDLFTGRPYDMLDAALSDTISRFPIDIQPFRDMIEGMRSDLRKTRYNNFDELYMYCYYVAGTVGLMSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVGEE
  • >Zm00001eb271860_P001 MAIILVRAASPGLSAADSISHQGTLQCSTLLKTKRPAARRWMPCSLLGLHPWEAGRPSPAVYSSLAVNPAGEAVVSSEQKVYDVVLKQAALLKRQLRTPVLDARPQDMDMPRNGLKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPTALDRWEKRLEDLFTGRPYDMLDAALSDTISRFPIDIQPFRDMIEGMRSDLRKTRYNNFDELYMYCYYVAGTVGLMSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVGEE